• Wolf A, Liesinger L, Spoerk S, Schittmayer M, Lang-Loidolt D, Birner-Gruenberger R, Tomazic PV. Olfactory cleft proteome does not reflect olfactory performance in patients with idiopathic and postinfectious olfactory disorder: A pilot study.
    Sci Rep. 2018 Dec 3;8(1):17554. [OPEN ACCESS] Pubmed
  • Contreras-Duarte S, Santander N, Birner-Gruenberger R, Wadsack C, Rigotti A, Busso D. High density lipoprotein cholesterol and proteome in SR-B1 KO mice: lost in precipitation.
    J Transl Med. 2018 Nov 12;16(1):309. [OPEN ACCESS] Pubmed
  • Fechter K, Feichtinger J, Prochazka K, Unterluggauer JJ, Pansy K, Steinbauer E, Pichler M, Haybaeck J, Prokesch A, Greinix HT, Beham-Schmid C, Neumeister P, Thallinger GG, Deutsch AJA. Cytoplasmic location of NR4A1 in aggressive lymphomas is associated with a favourable cancer specific survival.
    Sci Rep. 2018 Sep 28 [OPEN ACCESS] Pubmed
  • Unterluggauer JJ, Prochazka K, Tomazic PV, Huber HJ, Seeboeck R, Fechter K, Steinbauer E, Gruber V, Feichtinger J, Pichler M, Weniger MA, Küppers R, Sill H, Schicho R, Neumeister P, Beham-Schmid C, Deutsch AJA, Haybaeck J. Expression profile of translation initiation factor eIF2B5 in diffuse large B-cell lymphoma and its correlation to clinical outcome.
    Blood Cancer J. 2018 Aug 22 [OPEN ACCESS] Pubmed
  • Prusty BK, Gulve N, Govind S, Krueger GRF, Feichtinger J, Larcombe L, Aspinall R, Ablashi DV, Toro CT Active HHV-6 Infection of Cerebellar Purkinje Cells in Mood Disorders.
    Front Microbiol. 2018 Aug 21 [OPEN ACCESS] Pubmed
  • Bhutada G, Kavšček M, Hofer F, Gogg-Fassolter G, Schweiger M, Darnhofer B, Kordiš D, Birner-Gruenberger R, Natter K.
    Characterization of a lipid droplet protein from Yarrowia lipolytica that is required for its oleaginous phenotype.
    Biochim Biophys Acta. 2018 Jul 25;1863(10):1193-1205. [OPEN ACCESS] Pubmed
  • Kuret T, Burja B, Feichtinger J, Thallinger GG, Frank-Bertoncelj M, Lakota K, Zigon P, Sodin-Semrl S, Cucnik S, Tomsic M, Hocevar A. Gene and miRNA expression in giant cell arteritis-a concise systematic review of significantly modified studies.
    Clin Rheumatol. 2018 in press [OPEN ACCESS] Pubmed
  • Irisarri I, Singh P, Koblmüller S, Torres-Dowdall J, Henning F, Franchini P, Fischer C, Lemmon AR, Lemmon EM, Thallinger GG, Sturmbauer C, Meyer A. Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes.
    Nat Commun. 2018;9(1):3159. [OPEN ACCESS] Pubmed
  • Burja B, Feichtinger J, Lakota K, Thallinger GG, Sodin-Semrl S, Kuret T, Rotar Z, Jese R, Zigon P, Cucnik S, Mali P, Praprotnik S, Tomsic M, Hocevar A. Utility of serological biomarkers for giant cell arteritis in a large cohort of treatment-naïve patients.
    Clin Rheumatol. Biol. 2018 in press [OPEN ACCESS] Pubmed
  • Fuchs R, Stracke A, Holzmann V, Luschin-Ebengreuth G, Meier-Allard N, Ebner N, Lassacher TM, Absenger-Novak M, Fröhlich E, Schittmayer M, Cano Crespo S, Palacin M, Rinner B, Birner-Gruenberger R.
    Prazosin induced lysosomal tubulation interferes with cytokinesis and the endocytic sorting of the tumour antigen CD98hc.
    Biochim Biophys Acta. 2018 Jun 15;1865(9):1211-1229. doi:10.1016 [OPEN ACCESS] Pubmed
  • Fladischer P, Weingartner A, Blamauer J, Darnhofer B, Birner-Gruenberger R, Kardashliev T, Ruff AJ, Schwaneberg U, Wiltschi B.
    A Semi-Rationally Engineered Bacterial Pyrrolysyl-tRNA Synthetase Genetically Encodes Phenyl Azide Chemistry.
    Biotechnol J. 2018 Jun 3:e1800125. doi: 10.1002 [OPEN ACCESS] Pubmed
  • Tobola F, Lelimousin M, Varrot A, Gillon E, Darnhofer B, Blixt O, Birner-Gruenberger R, Imberty A, Wiltschi B. Effect of Noncanonical Amino Acids on Protein-Carbohydrate Interactions: Structure, Dynamics, and Carbohydrate Affinity of a Lectin Engineered with Fluorinated Tryptophan Analogs.
    ACS Chem Biol. 2018 Jun 12. doi: 10.1021 [OPEN ACCESS] Pubmed
  • Schittmayer M, Birner-Gruenberger R, Zamboni N.
    Quantification of Cellular Folate Species by LC-MS after Stabilization by Derivatization.
    Anal Chem. 2018 Jun 19;90(12):7349-7356. doi: 10.1021 [OPEN ACCESS] Pubmed
  • Schäffer S, Koblmüller S, Klymiuk I, Thallinger GG.
    The mitochondrial genome of the oribatid mite Paraleius leontonychus: new insights into tRNA evolution and phylogenetic relationships in acariform mites.
    Sci Rep. 2018 May 15;8(1):7558. doi: 10.1038 [OPEN ACCESS] Pubmed
  • Pucher BM, Zeleznik OA, Thallinger GG.
    Comparison and evaluation of integrative methods for the analysis of multilevel omics data: a study based on simulated and experimental cancer data.
    Brief Bioinform. 2018 Apr 23. doi: 10.1093/bib/bby027. [OPEN ACCESS] Pubmed
  • Montani L, Pereira JA, Norrmén C, Pohl HBF, Tinelli E, Trötzmüller M, Figlia G, Dimas P, von Niederhäusern B, Schwager R, Jessberger S, Semenkovich CF, Köfeler HC, Suter U.
    De novo fatty acid synthesis by Schwann cells is essential for peripheral nervous system myelination.
    J Cell Biol. 2018, 217(4):1352-1367 [OPEN ACCESS] Pubmed
  • Schmid J, Liesinger L, Birner-Gruenberger R, Stojakovic T, Scharnagl H, Dieplinger B, Asslaber M, Radl R, Beer M, Polacin M, Mair J, Szolar D, Berghold A, Quasthoff S, Binder JS, Rainer PP.
    Elevated Cardiac Troponin T in Patients With Skeletal Myopathies.
    J Am Coll Cardiol. 2018 Apr 10;71(14):1540-1549. [OPEN ACCESS] Pubmed
  • Vogl T, Sturmberger L, Fauland PC, Hyden P, Fischer JE, Schmid C, Thallinger GG, Geier M, Glieder A.
    Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors.
    Bioeng. 2018 Apr;115(4):1037-1050. [OPEN ACCESS] Pubmed
  • Visram M, Radulovic M, Steiner S, Malanovic N, Eichmann TO, Wolinski H, Rechberger GN, Tehlivets O.
    Homocysteine regulates fatty acid and lipid metabolism in yeast.
    J Biol Chem. Microbiol. 2018 Apr 13;293(15):5544-5555. [OPEN ACCESS] Pubmed
  • Speziali G, Liesinger L, Gindlhuber J, Leopold C, Pucher B, Brandi J, Castagna A, Tomin T, Krenn P, Thallinger GG, Olivieri O, Martinelli N, Kratky D, Schittmayer M, Birner-Gruenberger R, Cecconi D.
    Myristic acid induces proteomic and secretomic changes associated with steatosis, cytoskeleton remodeling, endoplasmic reticulum stress, protein turnover and exosome release in HepG2 cells.
    J Proteomics. 2018 Apr 11. pii: S1874-3919(18)30167-2. [OPEN ACCESS] Pubmed
  • Zisser G, Ohmayer U, Mauerhofer C, Mitterer V, Klein I, Rechberger GN, Wolinski H, Prattes M, Pertschy B, Milkereit P, Bergler H.
    Viewing pre-60S maturation at a minute's timescale.
    Nucleic Acids Res. 2018 Apr 6;46(6):3140-3151. [OPEN ACCESS] Pubmed
  • Tomin T, Fritz K, Gindlhuber J, Waldherr L, Pucher B, Thallinger GG, Nomura DK, Schittmayer M, Birner-Gruenberger R.
    Deletion of Adipose Triglyceride Lipase Links Triacylglycerol Accumulation to a More-Aggressive Phenotype in A549 Lung Carcinoma Cells.
    J Proteome Res. 2018 Apr 6;17(4):1415-1425. [OPEN ACCESS] Pubmed
  • Tomazic PV, Liesinger L, Pucher B, Thallinger GG, Leitner A, Spoerk S, Gerstenberger C, Lang-Loidolt D, Birner-Gruenberger R.
    Comparison of tear proteome in allergic rhinoconjunctivitis patients and controls with respect to pollen season.
    Allergy. 2018 Mar 24. doi: 10.1111/all.13444. [OPEN ACCESS] Pubmed
  • Vahdati Hassani F, Abnous K, Mehri S, Jafarian A, Birner-Gruenberger R, Yazdian Robati R, Hosseinzadeh H.
    Proteomics and phosphoproteomics analysis of liver in male rats exposed to bisphenol A: Mechanism of hepatotoxicity and biomarker discovery.
    Food Chem Toxicol. 2018 Feb;112:26-38. [OPEN ACCESS] Pubmed
  • Burja B, Kuret T, Sodin-Semrl S, Lakota K, Rotar Ž, Ješe R, Mrak-Poljšak K, Žigon P, Thallinger GG, Feichtinger J, Čučnik S, Tomšič M, Praprotnik S, Hočevar A.
    A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods.
    Autoimmun Rev. 2018 Feb;17(2):188-194. [OPEN ACCESS] Pubmed
  • Eicher B, Marquardt D, Heberle FA, Letofsky-Papst I, Rechberger GN, Appavou MS, Katsaras J, Pabst G.
    Intrinsic Curvature-Mediated Transbilayer Coupling in Asymmetric Lipid Vesicles.
    Biophys J. 2018 Jan 9;114(1):146-157. [OPEN ACCESS] Pubmed
  • Bowden J. et al.
    Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950 Metabolites in Frozen Human Plasma.
    J Lipid Res. 2017, 58(12):2275-2288 [OPEN ACCESS] Pubmed
  • Vahdati Hassani F, Abnous K, Mehri S, Jafarian A, Birner-Gruenberger R, Yazdian Robati R, Hosseinzadeh H.
    Proteomics and phosphoproteomics analysis of liver in male rats exposed to bisphenol A: Mechanism of hepatotoxicity and biomarker discovery.
    Food Chem Toxicol. 2017 Dec 18;112:26-38. [OPEN ACCESS] Pubmed
  • Vogl T, Sturmberger L, Fauland PC, Hyden P, Fischer JE, Schmid C, Thallinger GG, Geier M, Glieder A.
    Methanol independent induction in Pichia pastoris by simple derepressed overexpression of single transcription factors.
    Biotechnol Bioeng. 2017 Dec 27 doi: 10.1002/bit.26529. [OPEN ACCESS] Pubmed
  • Burja B, Kuret T, Sodin-Semrl S, Lakota K, Rotar Z, Jese R, Mrak-Poljsak K, Zigon P, Thallinger GG, Feichtinger J, Cucnik S, Tomsic M, Praprotnik S, Hocevar A.
    A concise review of significantly modified serological biomarkers in giant cell arteritis, as detected by different methods.
    Autoimmun Rev. 2017 Nov 28;pii: S1568-9972(17)30295-1. [OPEN ACCESS] Pubmed
  • Klymiuk I, Bilgilier C, Stadlmann A, Thannesberger J, Kastner MT, Högenauer C, Püspök A, Biowski-Frotz S, Schrutka-Kölbl C, Thallinger GG, Steininger C.
    The Human Gastric Microbiome Is Predicated upon Infection with Helicobacter pylori
    Front. Microbiol. 2017 Dec 14. [OPEN ACCESS] Pubmed
  • Ring J, Rockenfeller P, Abraham C, Tadic J, Poglitsch M, Schimmel K, Westermayer J, Schauer S, Achleitner B, Schimpel C, Moitzi B, Rechberger GN, Sigrist SJ, Carmona-Gutierrez D, Kroemer G, Büttner S, Eisenberg T, Madeo F.
    Mitochondrial energy metabolism is required for lifespan extension by the spastic paraplegia-associated protein spartin.
    Microb Cell. 2017, Nov 30;4(12):411-422. [OPEN ACCESS] Pubmed
  • Pauling JK, Hermansson M, Hartler J, Christiansen K, Gallego SF, Peng B, Ahrends R, Ejsing CS.
    Proposal for a common nomenclature for fragment ions in mass spectra of lipids.
    PLoS One 2017 Nov 21;12(11) [OPEN ACCESS] Pubmed
  • Woodsmith J, Apelt L, Casado-Medrano V, Özkan Z, Timmermann B, Stelzl U
    Protein interaction perturbation profiling at amino-acid resolution.
    Nature Methods 2017 Oct 16. doi: 10.1038/nmeth.4464. [OPEN ACCESS] Pubmed
  • Corwin T, Woodsmith J, Apelt F, Fontaine JF, Meierhofer D, Helmuth J, Grossmann A, Andrade-Navarro MA, Ballif BA, Stelzl U.
    Defining Human Tyrosine Kinase Phosphorylation Networks Using Yeast as an In Vivo Model Substrate.
    Cell Syst. 2017 Aug 23;5(2):128-139.e.4. [OPEN ACCESS] Pubmed
  • Riederer M, Lechleitner M, Köfeler H, Frank S.
    Reduced expression of adipose triglyceride lipase decreases arachidonic acid release and prostacyclin secretion in human aortic endothelial cells.
    Arch Physiol Biochem. 2017, Oct;123(4):249-253 [OPEN ACCESS] Pubmed
  • Trötzmüller M, Triebl A, Ajsic A, Hartler J, Köfeler HC, Regittnig W.
    Determination of the Isotopic Enrichment of 13C- and 2H-Labeled Tracers of Glucose Using High-Resolution Mass Spectrometry – Application to Dual- and Triple-Tracer Studies
    Anal Chem. 2017 October 31 [OPEN ACCESS] Pubmed
  • Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O,Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC, Thallinger GG.
    Deciphering lipid structures based on platform-independent decision rules.
    Nature Methods 2017 Oct 23; doi:10.1038/nmeth.4470 [OPEN ACCESS] Pubmed
  • Schittmayer M, Birner-Gruenberger R.
    Resolution Ladder for High-Resolution Mass Spectrometry.
    Anal Chem. 2017 Sep 19;89(18):9611-9615. [OPEN ACCESS] Pubmed
  • Bueschl C, Kluger B, Neumann NKN, Doppler M, Maschietto V, Thallinger GG, Meng-Reiterer J, Krska R, Schuhmacher R.
    MetExtract II: A Software Suite for Stable Isotope-Assisted Untargeted Metabolomics.
    Anal Chem. 2017 Sep 5;89(17):9518-9526. [OPEN ACCESS] Pubmed
  • Öster C., Kosol S., Hartlmüller C., Lamley J.M., Iuga D., Oss A., Org M.L., Vanatalu K., Samoson A., Madl T., Lewandowski J.R.
    Characterization of protein-protein interfaces in large complexes by solid state NMR solvent paramagnetic relaxation enhancements.
    Journal of the American Chemical Society 139 (2017) 12165-12174 [OPEN ACCESS] Pubmed
  • Madl T.
    Patchy proteins form a perfect lens.
    Science 2017, Aug Vol 357,Issue 6351,546-547 [OPEN ACCESS] Link
  • Šmidák R, Köfeler HC, Hoeger H, Lubec G.
    Comprehensive identification of age-related lipidome changes in rat amygdala during normal aging.
    PLoS One. 2017, Jul 3;12(7):e0180675. [OPEN ACCESS] Pubmed
  • Stryeck S., Birner-Gruenberger R., Madl T.
    Integrative metabolomics as emerging tool to study autophagy regulation.
    Microbial Cell 2017 Jul 13;4(8):240-258 [OPEN ACCESS] Pubmed
  • Hartlmüller C., Günther J.C., Wolter A.C., Wöhnert J., Sattler M., Madl T.
    RNA structure refinement using NMR solvent accessibility data.
    Scientific Reports 7 (2017) 5393 [OPEN ACCESS] Pubmed
  • Vahdati Hassani F, Mehri S, Abnous K, Birner-Gruenberger R, Hosseinzadeh H
    Protective effect of crocin on BPA-induced liver toxicity in rats through inhibition of oxidative stress and downregulation of MAPK and MAPKAP signaling pathway and miRNA-122 expression.
    Food Chem Toxicol. 2017 Jul 6;107(Pt A):395-405. [OPEN ACCESS] Pubmed
  • Durcin M, Fleury A, Taillebois E, Hilairet G, Krupova Z, Henry C, Truchet S, Trötzmüller M, Köfeler H, Mabilleau G, Hue O, Andriantsitohaina R, Martin P, Le Lay S.
    Characterisation of adipocyte-derived extracellular vesicle subtypes identifies distinct protein and lipid signatures for large and small extracellular vesicles.
    J Extracell Vesicles. 2017 Apr 10;6(1):1305677. [OPEN ACCESS] Pubmed
  • Pessentheiner AR, Huber K, Pelzmann HJ, Prokesch A, Radner FPW, Wolinski H, Lindroos-Christensen J, Hoefler G, Rülicke T, Birner-Gruenberger R, Bilban M, Bogner-Strauss JG.
    APMAP interacts with lysyl oxidase-like proteins, and disruption of Apmap leads to beneficial visceral adipose tissue expansion.
    FASEB J. 2017 May 30. pii: fj.201601337R. [OPEN ACCESS] Pubmed
  • Lanfranchi E, Pavkov-Keller T, Koehler EM, Diepold M, Steiner K, Darnhofer B, Hartler J, Van Den Bergh T, Joosten HJ, Gruber-Khadjawi M, Thallinger GG, Birner-Gruenberger R, Gruber K, Winkler M,
    Glieder A.
    Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily.
    Sci Rep. 2017 May 3;7:46738. [OPEN ACCESS] Pubmed
  • Planells-Palop V, Hazazi A, Feichtinger J, Jezkova J, Thallinger G, Alsiwiehri NO, Almutairi M, Parry L, Wakeman JA, McFarlane RJ.
    Human germ/stem cell-specific gene TEX19 influences cancer cell proliferation and cancer prognosis.
    Mol Cancer. 2017 Apr 26;16(1):84. [OPEN ACCESS] Pubmed
  • Bhutada G, Kavšcek M, Ledesma-Amaro R, Thomas S, Rechberger GN, Nicaud JM, Natter K.
    Sugar versus fat: elimination of glycogen storage improves lipid accumulation in Yarrowia lipolytica.
    FEMS Yeast Res. 2017 Apr 17. [Epub ahead of print] [OPEN ACCESS] Pubmed
  • Triebl A, Trötzmüller M, Hartler J, Stojakovic T, Köfeler HC.
    Lipidomics by ultrahigh performance liquid chromatography-high resolution mass spectrometry and its application to complex biological samples.
    J Chromatogr B Analyt Technol Biomed Life Sci. 2017 May 15;1053:72-80. [OPEN ACCESS] Pubmed
  • Eicher B, Heberle FA, Marquardt D, Rechberger GN, Katsaras J,
    Pabst G.
    Joint small-angle X-ray and neutron scattering data analysis of asymmetric lipid vesicles
    J Appl Crystallogr. 2017 Feb 28;50(Pt 2):419-429. [OPEN ACCESS] Pubmed
  • Deutsch AJA, Rinner B, Pichler M, Prochazka K, Pansy K, Bischof M, Fechter K, Hatzl S, Feichtinger J, Wenzl K, Frisch MT, Stiegelbauer V, Prokesch A, Krogsdam A, Sill H, Thallinger GG, Greinix HT, Wang C, Beham-Schmid C, Neumeister P.
    NR4A3 Suppresses Lymphomagenesis through Induction of Proapoptotic Genes.
    Cancer Res. 2017 May 1;77(9):2375-2386. [OPEN ACCESS] Pubmed
  • Kohler V, Probst I, Aufschnaiter A, Büttner S, Schaden L, Rechberger GN, Koraimann G, Grohmann E, Keller W.
    Conjugative type IV secretion in Gram-positive pathogens: TraG, a lytic transglycosylase and endopeptidase, interacts withtranslocation channel protein TraM.
    Plasmid. 2017 Feb 17;91:9-18. [OPEN ACCESS] Pubmed
  • Triebl A, Hartler J, Trötzmüller M, Köfeler HC.
    Lipidomics: Prospects from a technological perspective.
    Biochim Biophys Acta. 2017 Mar 22 pii: S1388-1981(17)30052-5. [OPEN ACCESS] Pubmed
  • Riessberger-Gallé U, Hernández-López J, Rechberger G, Crailsheim K, Schuehly W.
    Lysophosphatidylcholine acts in the constitutive immune defence against American foulbrood in adult honeybees.
    Sci Rep. 2016 Aug 2;6:30699. [OPEN ACCESS] Pubmed
  • Karbiener M, Darnhofer B, Frisch MT, Rinner B, Birner-Gruenberger R,Gugatschka M.
    Comparative proteomics of paired vocal fold and oral mucosa fibroblasts.
    J Proteomics. 2017 Jan 15;155:11-21. [OPEN ACCESS] Pubmed
  • Hofer DC, Pessentheiner AR, Pelzmann HJ, Schlager S, Madreiter-Sokolowski CT, Kolb D, Eichmann TO, Rechberger G, Bilban M, Graier WF, Kratky D, Bogner-Strauss JG.
    Critical role of the peroxisomal protein PEX16 in white adipocyte development and lipid homeostasis.
    Biochim Biophys Acta. 2017 Mar;1862(3):358-368. [OPEN ACCESS] Pubmed
  • Anvarian Z., Nojima H., van Kappel E.C., Madl T., Spit M., Viertler M., Jordens I., Low T.Y., van Scherpenzeel R., Kuper I., Richter K., Heck A.J.R., Boelens R., Vincent J.P., Rüdiger S.G.D., Maurice M.M.
    Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network.
    Nature Structural and Molecular Biology 23 (2016) 324-332 [OPEN ACCESS] Pubmed
  • Suárez-Calvet M., Neumann M., Arzberger T., Abou-Ajram C., Funk E., Kremmer E., Göbl C., Resch M., Bourgeois B., Madl T., Mackenzie I.R.A., Ansorge O., Dormann D., Haass C.
    Monomethylated and unmethylated FUS exhibit increased binding to Transportin and distinguish FTLD-FUS from ALS-FUS.
    Acta Neuropathologica 131 (2016) 587-604 [OPEN ACCESS] Pubmed
  • Weber J., Bao H., Hartlmüller C., Graebsch A., Truger M., Janowski R., Madl T., Jin P., Niessing D.
    Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha.
    eLifey 5 (2016) e11297 [OPEN ACCESS] Pubmed
  • Wallace PW, Haernvall K, Ribitsch D, Zitzenbacher S, Schittmayer M, Steinkellner G, Gruber K, Guebitz GM, Birner-Gruenberger R.
    PpEst is a novel PBAT degrading polyesterase identified by proteomic screening of Pseudomonas pseudoalcaligenes.
    Appl Microbiol Biotechnol. 2016 Nov 21. [OPEN ACCESS] Pubmed
  • Mitterer V, Gantenbein N, Birner-Gruenberger R, Murat G, Bergler H, Kressler D, Pertschy B.
    Nuclear import of dimerized ribosomal protein Rps3 in complex with its chaperone Yar1.
    Sci Rep. 2016 Nov 7. [OPEN ACCESS] Pubmed
  • Meng C, Zeleznik OA, Thallinger GG, Kuster B, Gholami AM,
    Culhane AC.
    Dimension reduction techniques for the integrative analysis of
    multi-omics data.

    Brief Bioinform. 2016;17(4):628-41. [OPEN ACCESS] Pubmed
  • Smith RC, King JG, Tao D, Zeleznik OA, Brando C, Thallinger GG, Dinglasan RR.
    Molecular profiling of phagocytic immune cells in Anopheles gambiae reveals integral roles for hemocytes in mosquito innate immunity.
    Mol Cell Proteomics. 2016 Sep 13. Pubmed
  • Krainer FW, Gerstmann MA, Darnhofer B, Birner-Gruenberger R,
    Glieder A.
    Biotechnological advances towards an enhanced peroxidase production in Pichia pastoris.
    J Biotechnol. 2016 Sep 10;233:181-9.​ [OPEN ACCESS] Pubmed
  • Klapper M, Findeis D, Koefeler H, Döring F.
    Methyl group donors abrogate adaptive responses to dietary restriction in C. elegans.
    Genes Nutr. 2016 Mar 17​. [OPEN ACCESS] Pubmed
  • Ulz P, Thallinger GG, Auer M, Graf R, Kashofer K, Jahn SW, Abete L, Pristauz G, Petru E, Geigl JB, Heitzer E, Speicher MR.
    Inferring expressed genes by whole-genome sequencing of plasma DNA.
    Nat Genet. 2016 Aug 29. [OPEN ACCESS] Pubmed
  • Krause R, Halwachs B, Thallinger GG, Klymiuk I, Gorkiewicz G, Hoenigl M, Prattes J, Valentin T, Heidrich K, Buzina W, Salzer HJ, Rabensteiner J, Prüller F, Raggam RB, Meinitzer A, Moissl-Eichinger C, Högenauer C, Quehenberger F, Kashofer K, Zollner-Schwetz I.
    Characterisation of Candida within the Mycobiome/Microbiome of the Lower Respiratory Tract of ICU Patients.
    PLoS One. 2016 May 20. [OPEN ACCESS] Pubmed
  • Birner-Gruenberger R, Breinbauer R.
    Tracking Protein S-Fatty Acylation with Proteomics.
    Chembiochem. 2016 Jun 6. [OPEN ACCESS] Pubmed
  • Weinhandl K, Ballach M, Winkler M, Ahmad M, Glieder A, Birner-Gruenberger R, Fotheringham I, Escalettes F, Camattari A.
    Pichia pastoris mutants as host strains for efficient secretion of recombinant branched chain aminotransferase (BCAT).
    J Biotechnol. 2016 Jun 7. [OPEN ACCESS] Pubmed
  • Gomez-Escobar N, Almobadel N, Alzahrani O, Feichtinger J, Planells-Palop V, Alshehri Z, Thallinger GG, Wakeman JA, McFarlane RJ.
    Translin and Trax differentially regulate telomere-associated transcript homeostasis.
    Oncotarget. 2016 May 10 [OPEN ACCESS] Pubmed
  • Radović B, Vujić N, Leopold C, Schlager S, Goeritzer M, Patankar JV, Korbelius M, Kolb D, Reindl J, Wegscheider M, Tomin T, Birner-Gruenberger R, Schittmayer M, Groschner L, Magnes C, Diwoky C, Frank S, Steyrer E, Du H, Graier WF, Madl T, Kratky D.
    Lysosomal acid lipase regulates VLDL synthesis and insulin sensitivity in mice.
    Diabetologia. 2016 May 6. [OPEN ACCESS] Pubmed
  • Sturmberger L, Chappell T, Geier M, Krainer F, Day KJ, Vide U, Trstenjak S, Schiefer A, Richardson T, Soriaga L, Darnhofer B, Birner-Gruenberger R, Glick BS, Tolstorukov I, Cregg J, Madden K, Glieder A.
    Refined Pichia pastoris reference genome sequence.
    J Biotechnol. 2016 Apr 12. pii: S0168-1656(16)30203-6.
    [OPEN ACCESS] Pubmed
  • Pavkov-Keller T, Bakhuis J, Steinkellner G, Jolink F, Keijmel E, Birner-Gruenberger R, Gruber K.
    Structures of almond Hydroxynitrile Lyase Isoenzyme 5 provide a rationale for the lack of oxidoreductase activity in flavin dependent HNLS.
    J Biotechnol. 2016 Apr 8. pii: S0168-1656(16)30193-6.
    [OPEN ACCESS] Pubmed
  • Prokesch A, Pelzmann HJ, Pessentheiner AR, Huber K, Madreiter-Sokolowski CT, Drougard A, Schittmayer M, Kolb D, Magnes C, Trausinger G, Graier WF, Birner-Gruenberger R, Pospisilik JA, Bogner-Strauss JG.
    N-acetylaspartate catabolism determines cytosolic acetyl-CoA levels and histone acetylation in brown adipocytes.
    Sci Rep. 2016 Apr 5;6:23723. [OPEN ACCESS] Pubmed
  • Suárez-Calvet M, Neumann M, Arzberger T, Abou-Ajram C, Funk E, Hartmann H, Edbauer D, Kremmer E, Göbl C, Resch M, Bourgeois B, Madl T, Reber S, Jutzi D, Ruepp MD, Mackenzie IR, Ansorge O, Dormann D, Haass C.
    Monomethylated and unmethylated FUS exhibit increased binding to Transportin and distinguish FTLD-FUS from ALS-FUS.
    Acta Neuropathol. 2016 Apr;131(4):587-604. [OPEN ACCESS] Pubmed
  • Schittmayer M, Fritz K, Liesinger L, Griss J, Birner-Gruenberger R.
    Cleaning out the Litterbox of Proteomic Scientists' Favorite Pet: Optimized Data Analysis Avoiding Trypsin Artifacts.
    J Proteome Res. 2016 Apr 1;15(4):1222-9. [OPEN ACCESS] Pubmed
  • Anvarian Z, Nojima H, van Kappel EC, Madl T, Spit M, Viertler M, Jordens I, Low TY, van Scherpenzeel RC, Kuper I, Richter K, Heck AJ, Boelens R, Vincent JP, Rüdiger SG, Maurice MM.
    Axin cancer mutants form nanoaggregates to rewire the Wnt signaling network.
    Nat Struct Mol Biol. 2016 Apr;23(4):324-32. [OPEN ACCESS] Pubmed
  • Kollau A, Russwurm M, Neubauer A, Rechberger G, Schmidt K, Koesling D, Fassett J, Schrammel A, Mayer B.
    Scavenging of nitric oxide by hemoglobin in the tunica media of porcine coronary arteries.
    Nitric Oxide. 2016 Apr 1;54:8-14. [OPEN ACCESS] Pubmed
  • Schmökel V, Memar N, Wiekenberg A, Trotzmüller M, Schnabel R,
    Döring F.
    Genetics of Lipid-Storage Management in Caenorhabditis elegans Embryos.
    Genetics. 2016 Mar;202(3):1071-83. [OPEN ACCESS] Pubmed
  • Vogl T, Sturmberger L, Kickenweiz T, Wasmayer R, Schmid C, Hatzl AM, Gerstmann MA, Pitzer J, Wagner M, Thallinger GG, Geier M, Glieder A.
    A Toolbox of Diverse Promoters Related to Methanol Utilization: Functionally Verified Parts for Heterologous Pathway Expression in Pichia pastoris.
    ACS Synth Biol. 2016 Feb 19;5(2):172-86. [OPEN ACCESS] Pubmed
  • Krainer FW, Darnhofer B, Birner-Gruenberger R, Glieder A.
    Recombinant production of a peroxidase-protein G fusion protein in Pichia pastoris.
    J Biotechnol. 2016 Feb 10;219:24-7. [OPEN ACCESS] Pubmed
  • Tomazic PV, Birner-Gruenberger R, Leitner A, Spoerk S, Lang-Loidolt D.
    Seasonal proteome changes of nasal mucus reflect perennial inflammatory response and reduced defence mechanisms and plasticity in allergic rhinitis.
    J Proteomics. 2016 Feb 5;133:153-60. [OPEN ACCESS] Pubmed
  • Weber J, Bao H, Hartlmüller C, Wang Z, Windhager A, Janowski R, Madl T, Jin P, Niessing D.
    Structural basis of nucleic-acid recognition and double-strand unwinding by the essential neuronal protein Pur-alpha.
    Elife. 2016 Jan 8;5. pii: e11297. doi: 10.7554/eLife.11297.
    [OPEN ACCESS] Pubmed
  • Nusshold C, Üllen A, Kogelnik N, Bernhart E, Reicher H, Plastira I, Glasnov T, Zangger K, Rechberger G, Kollroser M, Fauler G, Wolinski H, Weksler BB, Romero IA, Kohlwein SD, Couraud PO, Malle E, Sattler W.
    Assessment of electrophile damage in a human brain endothelial cell line utilizing a clickable alkyne analog of 2-chlorohexadecanal.
    Free Radic Biol Med. 2016 Jan;90:59-74. [OPEN ACCESS] Pubmed
  • Hacker C., Christ N.A., Duchardt-Ferner E., Korn S., Göbl C., Berninger L., Düsterhus S., Hellmich U.A., Madl T., Kötter P., Entian K.D., Wöhnert J.
    The Solution Structure of the Lantibiotic Immunity Protein NisI and Its Interactions with Nisin.
    Journal of Biological Chemistry 290 (2015) 28869-28886 [OPEN ACCESS] Pubmed
  • Haslbeck V., Eckl J.M., Drazic A., Rutz D.A., Lorenz O.R., Zimmermann K., Kriehuber T., Lindemann C., Madl T., Richter K.
    The activity of protein phosphatase 5 towards native clients is modulated by the middle- and C-terminal domains of Hsp90.
    Scientific Reports 5 (2015) 17058 [OPEN ACCESS] Pubmed
  • Kavšček M., Bhutada G., Madl T., Natter K.
    Optimization of lipid production with a genome-scale model of Yarrowia lipolytica.
    BMC Systems Biology 9 (2015) 72 [OPEN ACCESS] Pubmed
  • Sturmberger L, Wallace PW, Glieder A, Birner-Gruenberger R.
    Synergism of proteomics and mRNA sequencing for enzyme discovery.
    J Biotechnol. 2015 Dec 18. pii: S0168-1656(15)30215-7.
    [OPEN ACCESS] Pubmed
  • Haslbeck V, Eckl JM, Drazic A, Rutz DA, Lorenz OR, Zimmermann K, Kriehuber T, Lindemann C, Madl T, Richter K.
    The activity of protein phosphatase 5 towards native clients is modulated by the middle- and C-terminal domains of Hsp90.
    SciRep. 2015 Nov 23;5:17058. [OPEN ACCESS] Pubmed
  • Leypold M, Wallace PW, Kljajic M, Schittmayer M, Pletz J, Illaszewicz-Trattner C, Guebitz GM, Birner-Gruenberger R, Breinbauer R.
    A robust and simple protocol for the synthesis of arylfluorophosphonates.
    Tetrahedron Letters 2015 Oct;56(41):5619-5622. ScienceDirect
  • Fuchs, R; Stracke, A; Ebner, N; Zeller, CW; Raninger, AM; Schittmayer, M; Kueznik, T; Absenger-Novak, M; Birner-Gruenberger, R.
    The cytotoxicity of the α1-adrenoceptor antagonist prazosin is linked to an endocytotic mechanism equivalent to transport-P.
    Toxicology. 2015; 338:17-29 [OPEN ACCESS] Pubmed
  • Birner-Gruenberger, R; Breinbauer, R.
    Weighing the proteasome for covalent modifications.
    Chem Biol. 2015; 22(3):315-6 Pubmed

  • Aradska, J; Bulat, T; Sialana, FJ; Birner-Gruenberger, R; Erich, B;
    Lubec, G.
    Gel-free mass spectrometry analysis of Drosophila melanogaster heads.
    Proteomics. 2015; 15(19):3356-60 Pubmed

  • Hacker, C; Christ, NA; Duchardt-Ferner, E; Korn S, Göbl, C; Berninger, L; Düsterhus, S; Hellmich, UA; Madl, T; Kötter, P; Entian, KD; Wöhnert, J.
    The solution structure of the lantibiotic immunity protein NisI and its interactions with nisin.
    J Biol Chem. 2015; in press [OPEN ACCESS] Pubmed

  • Kavšček, M; Bhutada, G; Madl, T; Natter, K.
    Optimization of lipid production with a genome-scale model of Yarrowia lipolytica.
    BMC Syst Biol. 2015; 9:72 [OPEN ACCESS] Pubmed

  • Sala, P; Pötz, S; Brunner, M; Trötzmüller, M; Fauland, A; Triebl, A; Hartler, J; Lankmayr, E; Köfeler, HC.
    Determination of oxidized phosphatidylcholines by hydrophilic interaction liquid chromatography coupled to Fourier transform mass spectrometry.
    Int J Mol Sci. 2015; 16(4):8351-63 [OPEN ACCESS] Pubmed

  • Eichmann, TO; Grumet, L; Taschler, U; Hartler, J; Heier, C; Woblistin, A; Pajed, L; Kollroser, M; Rechberger, G; Thallinger, GG; Zechner, R; Haemmerle, G; Zimmermann, R; Lass, A.
    ATGL and CGI-58 are lipid droplet proteins of the hepatic stellate cell line HSC-T6.
    J Lipid Res. 2015; 56(10):1972-84 [OPEN ACCESS] Pubmed

  • Wolinski, H; Hofbauer, HF; Hellauer, K; Cristobal-Sarramian, A; Kolb, D; Radulovic, M; Knittelfelder, OL; Rechberger, GN; Kohlwein, SD.
    Seipin is involved in the regulation of phosphatidic acid metabolism at a subdomain of the nuclear envelope in yeast.
    Biochim Biophys Acta. 2015; 1851(11):1450-64 [OPEN ACCESS] Pubmed

  • Troppan, K; Wenzl, K; Pichler, M; Pursche, B; Schwarzenbacher, D; Feichtinger, J; Thallinger, GG; Beham-Schmid, C; Neumeister, P; Deutsch, A.
    miR-199a and miR-497 Are Associated with Better Overall Survival due to Increased Chemosensitivity in Diffuse Large B-Cell Lymphoma Patients.
    Int J Mol Sci. 2015; 16(8):18077-95 [OPEN ACCESS] Pubmed

  • Tomescu, OA; Mattanovich, D; Thallinger, GG.
    Integrative omics analysis. A study based on Plasmodium falciparum mRNA and protein data.
    BMC Syst Biol. 2014; 8 Suppl2:S4 [OPEN ACCESS] Pubmed

  • Schellenberg, JJ; Verbeke, TJ; McQueen, P; Krokhin, OV; Zhang, X; Alvare, G; Fristensky, B; Thallinger, GG; Henrissat, B; Wilkins, JA; Levin, DB; Sparling, R.
    Enhanced whole genome sequence and annotation of Clostridium stercorarium DSM8532T using RNA-seq transcriptomics and high-throughput proteomics.
    BMC Genomics. 2014; 15:567 [OPEN ACCESS] Pubmed

  • Vogl, T; Thallinger, GG; Zellnig, G; Drew, D; Cregg, JM; Glieder, A; Freigassner, M.
    Towards improved membrane protein production in Pichia pastoris: general and specific transcriptional response to membrane protein overexpression.
    N Biotechnol. 2014; 31(6):538-52 Pubmed

  • Sahu-Osen, A; Montero-Moran, G; Schittmayer, M; Fritz, K; Dinh, A; Chang, YF; McMahon, D; Boeszoermenyi, A; Cornaciu, I; Russell, D; Oberer, M; Carman, GM; Birner-Gruenberger, R; Brasaemle, DL.
    CGI-58/ABHD5 is phosphorylated on Ser239 by protein kinase A: control of subcellular localization.
    J Lipid Res. 2015; 56(1):109-121 [OPEN ACCESS] Pubmed

  • Wildberger, P; Pfeiffer, M; Brecker, L; Rechberger, GN; Birner-Gruenberger, R; Nidetzky, B.
    Phosphoryl Transfer from α-d-Glucose 1-Phosphate Catalyzed by Escherichia coli Sugar-Phosphate Phosphatases of Two Protein Superfamily Types.
    Appl Environ Microbiol. 2015; 81(5):1559-1572 Pubmed

  • Knittelfelder OL; Weberhofer BP; Eichmann TO; Kohlwein SD; Rechberger GN.
    A versatile ultra-high performance LC-MS method for lipid profiling.
    J Chromatogr B Analyt Technol Biomed Life Sci. 2014; 951-952:119-28 [OPEN ACCESS] Pubmed

  • Tomazic, PV; Birner-Gruenberger, R; Leitner, A; Darnhofer, B; Spoerk, S; Lang-Loidolt, D.
    Apolipoproteins have a potential role in nasal mucus of allergic rhinitis patients: A proteomic study.
    Laryngoscope. 2015; 125(3):E91-6 Pubmed

  • Hartler, J; Koefeler, H; Troetzmueller, M; Thallinger, GG; Spener, F.
    Assessment of lipidomic species in hepatocyte lipid droplets from stressed mouse models.
    Sci Data 2014; 1:140051 [OPEN ACCESS] Pubmed

  • Triebl, A; Troetzmueller, M; Eberl, A; Hanel, P; Hartler, J; Koefeler, HC.
    Quantitation of phosphatidic acid and lysophosphatidic acid molecular species using hydrophilic interaction liquid chromatography coupled to electrospray ionization high resolution mass spectrometry.
    J Chromatogr A. 2014; 1347:104-110 Pubmed

  • Birner-Gruenberger, R; Schittmayer, M; Holzer, M; Marsche, G.
    Understanding high-density lipoprotein function in disease: Recent advances in proteomics unravel the complexity of its composition and biology.
    Prog Lipid Res. 2014; 56C:36-46 [OPEN ACCESS] Pubmed

  • Cavalcante Hissa, D; Arruda Bezerra, G; Birner-Gruenberger, R; Paulino Silva, L; Usón, I; Gruber, K; Maciel Melo, VM.
    Unique Crystal Structure of a Novel Surfactant Protein from the Foam Nest of the Frog Leptodactylus vastus.
    Chembiochem. 2014; 15(3):393-398 Pubmed

  • Tomazic, PV; Birner-Gruenberger, R; Leitner, A; Obrist, B; Spoerk, S; Lang-Loidolt, D.
    Nasal mucus proteomic changes reflect altered immune responses and epithelial permeability in patients with allergic rhinitis.
    J Allergy Clin Immunol. 2014; 133(3):741-750 Pubmed

  • Heo, S; Spoerk, S; Birner-Gruenberger, R; Lubec, G.
    Gel-based mass spectrometric analysis of hippocampal transmembrane proteins using high resolution LTQ Orbitrap Velos Pro.
    Proteomics. 2014; 14(17-18):2084-2088 Pubmed

  • Sreckovic, I; Birner-Gruenberger, R; Besenboeck, C; Miljkovic, M; Stojakovic, T; Scharnagl, H; Marsche, G; Lang, U; Kotur-Stevuljevic, J; Jelic-Ivanovic, Z; Desoye, G; Wadsack, C.
    Gestational diabetes mellitus modulates neonatal high-density lipoprotein composition and its functional heterogeneity.
    Biochim Biophys Acta. 2014; 1841(11):1619-1627 Pubmed

  • Kopecky, C; Haidinger, M; Birner-Gruenberger, R; Darnhofer, B; Kaltenecker, CC; Marsche, G; Holzer, M; Weichhart, T; Antlanger, M; Kovarik, JJ; Werzowa, J; Hecking, M; Säemann, MD.
    Restoration of Renal Function Does Not Correct Impairment of Uremic HDL Properties.
    J Am Soc Nephrol. 2014; 26(3):565-75. Pubmed